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Plotting ROC curve in cross validation using Matlab perfcurve



The Next CEO of Stack Overflow
2019 Community Moderator ElectionHow to represent ROC curve when using Cross-ValidationK-Fold Cross validation confusion?Validation curve unlike SKLearn samplek-fold cross-validation: model selection or variation in models when using k-fold cross validationCross Validation and training setTerminology - cross-validation, testing and validation set for classification taskSome confusions on Model selection using cross-validation approachDecent ROC, but horrible Precision-Recall curveWhy the results from Matlab curve fitting function differ when using custom equation?Validation curve










1












$begingroup$


I have the following code for a binary classifying using SVM, and 10 cross-validation,



k=10;
cp = classperf(lables);
cvFolds = crossvalind('Kfold', lables, k);
for i = 1:k
testIdx = (cvFolds == i); %# get indices of test instances
trainIdx = ~testIdx; %# get indices training instances


svmModel = fitcsvm(data_features(trainIdx,:), lables(trainIdx),
'Standardize',true,'KernelFunction','RBF','KernelScale','auto');

pred = predict(svmModel, data_features(testIdx,:));
cp = classperf(cp, pred, testIdx);
end
acc= cp.CorrectRate;
conf= cp.CountingMatrix;


I want to Plot the ROC curve using the perfcurve function in Matlab, However, the input 'score' changes each fold and can't be used outside the k-fold loop.



[X,Y] = perfcurve(labels,scores,posclass)



Any suggestion on how to plot a ROC in such case?










share|improve this question









$endgroup$
















    1












    $begingroup$


    I have the following code for a binary classifying using SVM, and 10 cross-validation,



    k=10;
    cp = classperf(lables);
    cvFolds = crossvalind('Kfold', lables, k);
    for i = 1:k
    testIdx = (cvFolds == i); %# get indices of test instances
    trainIdx = ~testIdx; %# get indices training instances


    svmModel = fitcsvm(data_features(trainIdx,:), lables(trainIdx),
    'Standardize',true,'KernelFunction','RBF','KernelScale','auto');

    pred = predict(svmModel, data_features(testIdx,:));
    cp = classperf(cp, pred, testIdx);
    end
    acc= cp.CorrectRate;
    conf= cp.CountingMatrix;


    I want to Plot the ROC curve using the perfcurve function in Matlab, However, the input 'score' changes each fold and can't be used outside the k-fold loop.



    [X,Y] = perfcurve(labels,scores,posclass)



    Any suggestion on how to plot a ROC in such case?










    share|improve this question









    $endgroup$














      1












      1








      1





      $begingroup$


      I have the following code for a binary classifying using SVM, and 10 cross-validation,



      k=10;
      cp = classperf(lables);
      cvFolds = crossvalind('Kfold', lables, k);
      for i = 1:k
      testIdx = (cvFolds == i); %# get indices of test instances
      trainIdx = ~testIdx; %# get indices training instances


      svmModel = fitcsvm(data_features(trainIdx,:), lables(trainIdx),
      'Standardize',true,'KernelFunction','RBF','KernelScale','auto');

      pred = predict(svmModel, data_features(testIdx,:));
      cp = classperf(cp, pred, testIdx);
      end
      acc= cp.CorrectRate;
      conf= cp.CountingMatrix;


      I want to Plot the ROC curve using the perfcurve function in Matlab, However, the input 'score' changes each fold and can't be used outside the k-fold loop.



      [X,Y] = perfcurve(labels,scores,posclass)



      Any suggestion on how to plot a ROC in such case?










      share|improve this question









      $endgroup$




      I have the following code for a binary classifying using SVM, and 10 cross-validation,



      k=10;
      cp = classperf(lables);
      cvFolds = crossvalind('Kfold', lables, k);
      for i = 1:k
      testIdx = (cvFolds == i); %# get indices of test instances
      trainIdx = ~testIdx; %# get indices training instances


      svmModel = fitcsvm(data_features(trainIdx,:), lables(trainIdx),
      'Standardize',true,'KernelFunction','RBF','KernelScale','auto');

      pred = predict(svmModel, data_features(testIdx,:));
      cp = classperf(cp, pred, testIdx);
      end
      acc= cp.CorrectRate;
      conf= cp.CountingMatrix;


      I want to Plot the ROC curve using the perfcurve function in Matlab, However, the input 'score' changes each fold and can't be used outside the k-fold loop.



      [X,Y] = perfcurve(labels,scores,posclass)



      Any suggestion on how to plot a ROC in such case?







      classification cross-validation matlab plotting






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Mar 24 at 18:43









      gingin

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