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Multi task learning with missing labels in Keras tutorial question



Announcing the arrival of Valued Associate #679: Cesar Manara
Planned maintenance scheduled April 17/18, 2019 at 00:00UTC (8:00pm US/Eastern)
2019 Moderator Election Q&A - Questionnaire
2019 Community Moderator Election ResultsOnline machine learning tutorialHow to deal with string labels in multi-class classification with keras?Evaluating machine learning model with missing featuresMulti-task learning for Multi-label classification?Multitask learning NN only trains on a few tasksMulti task learning in KerasMulti task learning architecture for Multi-label classificationWhy is my Keras model not learning image segmentation?Training multi-label classifier with unbalanced samples in KerasApplying CNN for cross sectional data










0












$begingroup$


https://www.dlology.com/blog/how-to-multi-task-learning-with-missing-labels-in-keras/



I followed this tutorial to create a multi task model for binary classification with missing labels in keras. The dataset that I'm using has inputs in the form of 167 length bit strings consisting of ones and zeroes (represent chemical structures), and the output is 12 binary labels representing toxicity of assays. I pretty much copied the tutorial exactly except for replacing their data with my curated dataset, and I'm getting 11% accuracy on my test set. I'm extremely confused about how the tutorial's masked_loss_function works, and I would appreciate any input on how to improve my model:



from keras import backend as K
def masked_loss_function(y_true, y_pred):
mask = K.cast(K.not_equal(y_true, mask_value), K.floatx())
return K.binary_crossentropy(y_true * mask, y_pred * mask)

model.compile(loss=masked_loss_function, optimizer='adam', metrics=['accuracy'])


Thanks so much!










share|improve this question











$endgroup$











  • $begingroup$
    Try applying KL divergence loss with similar and dissimilar pairs. ;)
    $endgroup$
    – William Scott
    Apr 2 at 0:40















0












$begingroup$


https://www.dlology.com/blog/how-to-multi-task-learning-with-missing-labels-in-keras/



I followed this tutorial to create a multi task model for binary classification with missing labels in keras. The dataset that I'm using has inputs in the form of 167 length bit strings consisting of ones and zeroes (represent chemical structures), and the output is 12 binary labels representing toxicity of assays. I pretty much copied the tutorial exactly except for replacing their data with my curated dataset, and I'm getting 11% accuracy on my test set. I'm extremely confused about how the tutorial's masked_loss_function works, and I would appreciate any input on how to improve my model:



from keras import backend as K
def masked_loss_function(y_true, y_pred):
mask = K.cast(K.not_equal(y_true, mask_value), K.floatx())
return K.binary_crossentropy(y_true * mask, y_pred * mask)

model.compile(loss=masked_loss_function, optimizer='adam', metrics=['accuracy'])


Thanks so much!










share|improve this question











$endgroup$











  • $begingroup$
    Try applying KL divergence loss with similar and dissimilar pairs. ;)
    $endgroup$
    – William Scott
    Apr 2 at 0:40













0












0








0





$begingroup$


https://www.dlology.com/blog/how-to-multi-task-learning-with-missing-labels-in-keras/



I followed this tutorial to create a multi task model for binary classification with missing labels in keras. The dataset that I'm using has inputs in the form of 167 length bit strings consisting of ones and zeroes (represent chemical structures), and the output is 12 binary labels representing toxicity of assays. I pretty much copied the tutorial exactly except for replacing their data with my curated dataset, and I'm getting 11% accuracy on my test set. I'm extremely confused about how the tutorial's masked_loss_function works, and I would appreciate any input on how to improve my model:



from keras import backend as K
def masked_loss_function(y_true, y_pred):
mask = K.cast(K.not_equal(y_true, mask_value), K.floatx())
return K.binary_crossentropy(y_true * mask, y_pred * mask)

model.compile(loss=masked_loss_function, optimizer='adam', metrics=['accuracy'])


Thanks so much!










share|improve this question











$endgroup$




https://www.dlology.com/blog/how-to-multi-task-learning-with-missing-labels-in-keras/



I followed this tutorial to create a multi task model for binary classification with missing labels in keras. The dataset that I'm using has inputs in the form of 167 length bit strings consisting of ones and zeroes (represent chemical structures), and the output is 12 binary labels representing toxicity of assays. I pretty much copied the tutorial exactly except for replacing their data with my curated dataset, and I'm getting 11% accuracy on my test set. I'm extremely confused about how the tutorial's masked_loss_function works, and I would appreciate any input on how to improve my model:



from keras import backend as K
def masked_loss_function(y_true, y_pred):
mask = K.cast(K.not_equal(y_true, mask_value), K.floatx())
return K.binary_crossentropy(y_true * mask, y_pred * mask)

model.compile(loss=masked_loss_function, optimizer='adam', metrics=['accuracy'])


Thanks so much!







classification keras beginner multitask-learning






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Apr 1 at 22:29









oW_

3,341933




3,341933










asked Apr 1 at 22:18









scouts9scouts9

11




11











  • $begingroup$
    Try applying KL divergence loss with similar and dissimilar pairs. ;)
    $endgroup$
    – William Scott
    Apr 2 at 0:40
















  • $begingroup$
    Try applying KL divergence loss with similar and dissimilar pairs. ;)
    $endgroup$
    – William Scott
    Apr 2 at 0:40















$begingroup$
Try applying KL divergence loss with similar and dissimilar pairs. ;)
$endgroup$
– William Scott
Apr 2 at 0:40




$begingroup$
Try applying KL divergence loss with similar and dissimilar pairs. ;)
$endgroup$
– William Scott
Apr 2 at 0:40










0






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