99% on the first epoch2019 Community Moderator ElectionKeras Callback example for saving a model after every epoch?Simple prediction with KerasIn which epoch should i stop the training to avoid overfittingConfusion regarding epoch and accuracyWhat is the logic of the epoch?Value error in Merging two different models in kerasSteps taking too long to completeIN CIFAR 10 DATASETWhat happened to the accuracy before and after 75th epoch. Why its unstable at first, then stepped up after the 75th epoch?

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99% on the first epoch



2019 Community Moderator ElectionKeras Callback example for saving a model after every epoch?Simple prediction with KerasIn which epoch should i stop the training to avoid overfittingConfusion regarding epoch and accuracyWhat is the logic of the epoch?Value error in Merging two different models in kerasSteps taking too long to completeIN CIFAR 10 DATASETWhat happened to the accuracy before and after 75th epoch. Why its unstable at first, then stepped up after the 75th epoch?










1












$begingroup$


I am working with time-series data and I am trying to classify the Fault happening in the system. The problem is no matter what I try so far, I get 99.79 validation accuracy on the very first epoch. It changes to 99.90 after couple of training runs but nevertheless, it's too good to be true. I have tried the KFold approach and custom metrics (F1) but result is still the same. I use SMOTE for oversampling, as one of the classes (0) is prevailing too much compared to other ones.
My main function:



output_nfs = data_normalization(nf_data.iloc[:, 1:28], 'PCA') #Normalization via StandardScaler
output_afs = data_normalization(af_data.iloc[:, 1:28], 'PCA')
output_nfs ['Fault'] = nf_data['Fault'].values
output_afs ['Fault'] = af_data['Fault'].values

output_nfs_rec_array = output_nfs.to_records (index = False)
output_afs_rec_array = output_afs.to_records (index = False)

final_data = np.concatenate ([output_nfs_rec_array, output_afs_rec_array])
np.random.shuffle(final_data)
y=final_data ['Fault'] #target
X=rf.drop_fields(final_data, ['Fault'], False).view (np.float64).reshape(len(final_data), len(final_data.dtype)-1) #Actual datapoints
y_new = [] #Combine all the faults into 3 separate categories: no faults (0), electrical (1), mechanical (2)
for i in range(len(y)):
if y[i]==0:
y_new.append(0)
elif (y[i] == 188)|(y[i] ==176)|(y[i] == 315)|(y[i] == 485)|(y[i] == 286)|(y[i] ==707)|
(y[i] == 959)|(y[i] ==958)|(y[i] ==817)|(y[i] == 187)|(y[i] == 489)|(y[i] == 632)|
(y[i] == 102)|(y[i] ==648)|(y[i] ==687)|(y[i] == 935)|(y[i] == 332)|(y[i] == 846)|
(y[i] == 944)|(y[i] == 254)|(y[i] == 181)|(y[i] == 317):
y_new.append(1) #electrical
elif (y[i]==604)|(y[i]==603)|(y[i]==958)|(y[i]==154)|(y[i]==162)|
(y[i]==165)|(y[i]==512)|(y[i]==948)|(y[i]==151)|(y[i]==163)|(y[i]==296)|
(y[i]==734)|(y[i]==844)|(y[i]==191)|(y[i]==560)|(y[i]==297)|(y[i]==504)|(y[i]==735):
y_new.append(2) #mechanical
y = y_new
y=np.array(y,dtype=int)

from sklearn.model_selection import KFold
n_folds = 10
kfold = KFold(n_folds, True, 1)
scores, members = list(), list()


import keras_metrics as km
from keras.layers import Dropout
labels = ['no faults', 'electrical fault', 'mechanical fault']
def evaluate_model(X_train, y_train, X_test, y_test):
trainy_enc=to_categorical(y_train)
testy_enc=to_categorical(y_test)
early_stopping_monitor = EarlyStopping(monitor='val_loss', patience=3)
model = Sequential()
n_cols = X_train.shape[1]
model.add (Dense (35, activation = 'relu', input_shape = (n_cols,)))
model.add(Dropout(0.5))
model.add (Dense (10, activation = 'relu'))
model.add(Dropout(0.5))
model.add (Dense (3, activation = 'softmax'))
model.compile (loss = 'categorical_crossentropy', optimizer = 'adam', metrics = ['acc'])
model.fit (X_train, trainy_enc, batch_size=10, shuffle=True, epochs= 100,
validation_data=(X_test,testy_enc), callbacks = [early_stopping_monitor], verbose = 1)
# evaluate the model
_, test_acc = model.evaluate(X_test, testy_enc, verbose=1)

return model, test_acc

for train_iX, test_iX in kfold.split(X):
X_train, y_train = X[train_iX], y[train_iX]
X_test, y_test = X[test_iX], y[test_iX]
#Class imbalance is too severe. No Fault prevails. Using smote to balance out electrical and mechanical faults
from imblearn.over_sampling import SMOTE
sm = SMOTE (random_state = 12)
X_train,y_train = sm.fit_resample(X_train,y_train)
X_train, y_train = utils.shuffle(X_train, y_train, random_state=42)
X_train, X_test = feature_selection (X_train, X_test, None, 'PCA', None)
model, test_acc = evaluate_model(X_train, y_train, X_test, y_test)
scores.append(test_acc)
members.append(model)


My PCA function is the following:



 pca = PCA (0.95)
pca.fit(X_train)
X_train_pca = pca.transform(X_train)
X_test_pca = pca.transform(X_test)
return X_train_pca, X_test_pca


Any suggestions will be appreciated.










share|improve this question









New contributor




eemamedo is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.







$endgroup$











  • $begingroup$
    Could you provide more information on your dataset? You are trying to resolve the problem by SMOTE. How unbalanced is your data set? The results suggest a huge imbalance in your data set.
    $endgroup$
    – MachineLearner
    Mar 22 at 9:22











  • $begingroup$
    Yes. I have a time-series dataset. I have constructed two separate datasets: no faults and faulty ones. The imbalance is following: No fault (0) is 43819 datapoints, 1 (electrical faults) is 581 datapoints, 2 (mechanical faults) is 47 datapoints. I balance out using SMOTE
    $endgroup$
    – eemamedo
    Mar 22 at 13:35















1












$begingroup$


I am working with time-series data and I am trying to classify the Fault happening in the system. The problem is no matter what I try so far, I get 99.79 validation accuracy on the very first epoch. It changes to 99.90 after couple of training runs but nevertheless, it's too good to be true. I have tried the KFold approach and custom metrics (F1) but result is still the same. I use SMOTE for oversampling, as one of the classes (0) is prevailing too much compared to other ones.
My main function:



output_nfs = data_normalization(nf_data.iloc[:, 1:28], 'PCA') #Normalization via StandardScaler
output_afs = data_normalization(af_data.iloc[:, 1:28], 'PCA')
output_nfs ['Fault'] = nf_data['Fault'].values
output_afs ['Fault'] = af_data['Fault'].values

output_nfs_rec_array = output_nfs.to_records (index = False)
output_afs_rec_array = output_afs.to_records (index = False)

final_data = np.concatenate ([output_nfs_rec_array, output_afs_rec_array])
np.random.shuffle(final_data)
y=final_data ['Fault'] #target
X=rf.drop_fields(final_data, ['Fault'], False).view (np.float64).reshape(len(final_data), len(final_data.dtype)-1) #Actual datapoints
y_new = [] #Combine all the faults into 3 separate categories: no faults (0), electrical (1), mechanical (2)
for i in range(len(y)):
if y[i]==0:
y_new.append(0)
elif (y[i] == 188)|(y[i] ==176)|(y[i] == 315)|(y[i] == 485)|(y[i] == 286)|(y[i] ==707)|
(y[i] == 959)|(y[i] ==958)|(y[i] ==817)|(y[i] == 187)|(y[i] == 489)|(y[i] == 632)|
(y[i] == 102)|(y[i] ==648)|(y[i] ==687)|(y[i] == 935)|(y[i] == 332)|(y[i] == 846)|
(y[i] == 944)|(y[i] == 254)|(y[i] == 181)|(y[i] == 317):
y_new.append(1) #electrical
elif (y[i]==604)|(y[i]==603)|(y[i]==958)|(y[i]==154)|(y[i]==162)|
(y[i]==165)|(y[i]==512)|(y[i]==948)|(y[i]==151)|(y[i]==163)|(y[i]==296)|
(y[i]==734)|(y[i]==844)|(y[i]==191)|(y[i]==560)|(y[i]==297)|(y[i]==504)|(y[i]==735):
y_new.append(2) #mechanical
y = y_new
y=np.array(y,dtype=int)

from sklearn.model_selection import KFold
n_folds = 10
kfold = KFold(n_folds, True, 1)
scores, members = list(), list()


import keras_metrics as km
from keras.layers import Dropout
labels = ['no faults', 'electrical fault', 'mechanical fault']
def evaluate_model(X_train, y_train, X_test, y_test):
trainy_enc=to_categorical(y_train)
testy_enc=to_categorical(y_test)
early_stopping_monitor = EarlyStopping(monitor='val_loss', patience=3)
model = Sequential()
n_cols = X_train.shape[1]
model.add (Dense (35, activation = 'relu', input_shape = (n_cols,)))
model.add(Dropout(0.5))
model.add (Dense (10, activation = 'relu'))
model.add(Dropout(0.5))
model.add (Dense (3, activation = 'softmax'))
model.compile (loss = 'categorical_crossentropy', optimizer = 'adam', metrics = ['acc'])
model.fit (X_train, trainy_enc, batch_size=10, shuffle=True, epochs= 100,
validation_data=(X_test,testy_enc), callbacks = [early_stopping_monitor], verbose = 1)
# evaluate the model
_, test_acc = model.evaluate(X_test, testy_enc, verbose=1)

return model, test_acc

for train_iX, test_iX in kfold.split(X):
X_train, y_train = X[train_iX], y[train_iX]
X_test, y_test = X[test_iX], y[test_iX]
#Class imbalance is too severe. No Fault prevails. Using smote to balance out electrical and mechanical faults
from imblearn.over_sampling import SMOTE
sm = SMOTE (random_state = 12)
X_train,y_train = sm.fit_resample(X_train,y_train)
X_train, y_train = utils.shuffle(X_train, y_train, random_state=42)
X_train, X_test = feature_selection (X_train, X_test, None, 'PCA', None)
model, test_acc = evaluate_model(X_train, y_train, X_test, y_test)
scores.append(test_acc)
members.append(model)


My PCA function is the following:



 pca = PCA (0.95)
pca.fit(X_train)
X_train_pca = pca.transform(X_train)
X_test_pca = pca.transform(X_test)
return X_train_pca, X_test_pca


Any suggestions will be appreciated.










share|improve this question









New contributor




eemamedo is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.







$endgroup$











  • $begingroup$
    Could you provide more information on your dataset? You are trying to resolve the problem by SMOTE. How unbalanced is your data set? The results suggest a huge imbalance in your data set.
    $endgroup$
    – MachineLearner
    Mar 22 at 9:22











  • $begingroup$
    Yes. I have a time-series dataset. I have constructed two separate datasets: no faults and faulty ones. The imbalance is following: No fault (0) is 43819 datapoints, 1 (electrical faults) is 581 datapoints, 2 (mechanical faults) is 47 datapoints. I balance out using SMOTE
    $endgroup$
    – eemamedo
    Mar 22 at 13:35













1












1








1


1



$begingroup$


I am working with time-series data and I am trying to classify the Fault happening in the system. The problem is no matter what I try so far, I get 99.79 validation accuracy on the very first epoch. It changes to 99.90 after couple of training runs but nevertheless, it's too good to be true. I have tried the KFold approach and custom metrics (F1) but result is still the same. I use SMOTE for oversampling, as one of the classes (0) is prevailing too much compared to other ones.
My main function:



output_nfs = data_normalization(nf_data.iloc[:, 1:28], 'PCA') #Normalization via StandardScaler
output_afs = data_normalization(af_data.iloc[:, 1:28], 'PCA')
output_nfs ['Fault'] = nf_data['Fault'].values
output_afs ['Fault'] = af_data['Fault'].values

output_nfs_rec_array = output_nfs.to_records (index = False)
output_afs_rec_array = output_afs.to_records (index = False)

final_data = np.concatenate ([output_nfs_rec_array, output_afs_rec_array])
np.random.shuffle(final_data)
y=final_data ['Fault'] #target
X=rf.drop_fields(final_data, ['Fault'], False).view (np.float64).reshape(len(final_data), len(final_data.dtype)-1) #Actual datapoints
y_new = [] #Combine all the faults into 3 separate categories: no faults (0), electrical (1), mechanical (2)
for i in range(len(y)):
if y[i]==0:
y_new.append(0)
elif (y[i] == 188)|(y[i] ==176)|(y[i] == 315)|(y[i] == 485)|(y[i] == 286)|(y[i] ==707)|
(y[i] == 959)|(y[i] ==958)|(y[i] ==817)|(y[i] == 187)|(y[i] == 489)|(y[i] == 632)|
(y[i] == 102)|(y[i] ==648)|(y[i] ==687)|(y[i] == 935)|(y[i] == 332)|(y[i] == 846)|
(y[i] == 944)|(y[i] == 254)|(y[i] == 181)|(y[i] == 317):
y_new.append(1) #electrical
elif (y[i]==604)|(y[i]==603)|(y[i]==958)|(y[i]==154)|(y[i]==162)|
(y[i]==165)|(y[i]==512)|(y[i]==948)|(y[i]==151)|(y[i]==163)|(y[i]==296)|
(y[i]==734)|(y[i]==844)|(y[i]==191)|(y[i]==560)|(y[i]==297)|(y[i]==504)|(y[i]==735):
y_new.append(2) #mechanical
y = y_new
y=np.array(y,dtype=int)

from sklearn.model_selection import KFold
n_folds = 10
kfold = KFold(n_folds, True, 1)
scores, members = list(), list()


import keras_metrics as km
from keras.layers import Dropout
labels = ['no faults', 'electrical fault', 'mechanical fault']
def evaluate_model(X_train, y_train, X_test, y_test):
trainy_enc=to_categorical(y_train)
testy_enc=to_categorical(y_test)
early_stopping_monitor = EarlyStopping(monitor='val_loss', patience=3)
model = Sequential()
n_cols = X_train.shape[1]
model.add (Dense (35, activation = 'relu', input_shape = (n_cols,)))
model.add(Dropout(0.5))
model.add (Dense (10, activation = 'relu'))
model.add(Dropout(0.5))
model.add (Dense (3, activation = 'softmax'))
model.compile (loss = 'categorical_crossentropy', optimizer = 'adam', metrics = ['acc'])
model.fit (X_train, trainy_enc, batch_size=10, shuffle=True, epochs= 100,
validation_data=(X_test,testy_enc), callbacks = [early_stopping_monitor], verbose = 1)
# evaluate the model
_, test_acc = model.evaluate(X_test, testy_enc, verbose=1)

return model, test_acc

for train_iX, test_iX in kfold.split(X):
X_train, y_train = X[train_iX], y[train_iX]
X_test, y_test = X[test_iX], y[test_iX]
#Class imbalance is too severe. No Fault prevails. Using smote to balance out electrical and mechanical faults
from imblearn.over_sampling import SMOTE
sm = SMOTE (random_state = 12)
X_train,y_train = sm.fit_resample(X_train,y_train)
X_train, y_train = utils.shuffle(X_train, y_train, random_state=42)
X_train, X_test = feature_selection (X_train, X_test, None, 'PCA', None)
model, test_acc = evaluate_model(X_train, y_train, X_test, y_test)
scores.append(test_acc)
members.append(model)


My PCA function is the following:



 pca = PCA (0.95)
pca.fit(X_train)
X_train_pca = pca.transform(X_train)
X_test_pca = pca.transform(X_test)
return X_train_pca, X_test_pca


Any suggestions will be appreciated.










share|improve this question









New contributor




eemamedo is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.







$endgroup$




I am working with time-series data and I am trying to classify the Fault happening in the system. The problem is no matter what I try so far, I get 99.79 validation accuracy on the very first epoch. It changes to 99.90 after couple of training runs but nevertheless, it's too good to be true. I have tried the KFold approach and custom metrics (F1) but result is still the same. I use SMOTE for oversampling, as one of the classes (0) is prevailing too much compared to other ones.
My main function:



output_nfs = data_normalization(nf_data.iloc[:, 1:28], 'PCA') #Normalization via StandardScaler
output_afs = data_normalization(af_data.iloc[:, 1:28], 'PCA')
output_nfs ['Fault'] = nf_data['Fault'].values
output_afs ['Fault'] = af_data['Fault'].values

output_nfs_rec_array = output_nfs.to_records (index = False)
output_afs_rec_array = output_afs.to_records (index = False)

final_data = np.concatenate ([output_nfs_rec_array, output_afs_rec_array])
np.random.shuffle(final_data)
y=final_data ['Fault'] #target
X=rf.drop_fields(final_data, ['Fault'], False).view (np.float64).reshape(len(final_data), len(final_data.dtype)-1) #Actual datapoints
y_new = [] #Combine all the faults into 3 separate categories: no faults (0), electrical (1), mechanical (2)
for i in range(len(y)):
if y[i]==0:
y_new.append(0)
elif (y[i] == 188)|(y[i] ==176)|(y[i] == 315)|(y[i] == 485)|(y[i] == 286)|(y[i] ==707)|
(y[i] == 959)|(y[i] ==958)|(y[i] ==817)|(y[i] == 187)|(y[i] == 489)|(y[i] == 632)|
(y[i] == 102)|(y[i] ==648)|(y[i] ==687)|(y[i] == 935)|(y[i] == 332)|(y[i] == 846)|
(y[i] == 944)|(y[i] == 254)|(y[i] == 181)|(y[i] == 317):
y_new.append(1) #electrical
elif (y[i]==604)|(y[i]==603)|(y[i]==958)|(y[i]==154)|(y[i]==162)|
(y[i]==165)|(y[i]==512)|(y[i]==948)|(y[i]==151)|(y[i]==163)|(y[i]==296)|
(y[i]==734)|(y[i]==844)|(y[i]==191)|(y[i]==560)|(y[i]==297)|(y[i]==504)|(y[i]==735):
y_new.append(2) #mechanical
y = y_new
y=np.array(y,dtype=int)

from sklearn.model_selection import KFold
n_folds = 10
kfold = KFold(n_folds, True, 1)
scores, members = list(), list()


import keras_metrics as km
from keras.layers import Dropout
labels = ['no faults', 'electrical fault', 'mechanical fault']
def evaluate_model(X_train, y_train, X_test, y_test):
trainy_enc=to_categorical(y_train)
testy_enc=to_categorical(y_test)
early_stopping_monitor = EarlyStopping(monitor='val_loss', patience=3)
model = Sequential()
n_cols = X_train.shape[1]
model.add (Dense (35, activation = 'relu', input_shape = (n_cols,)))
model.add(Dropout(0.5))
model.add (Dense (10, activation = 'relu'))
model.add(Dropout(0.5))
model.add (Dense (3, activation = 'softmax'))
model.compile (loss = 'categorical_crossentropy', optimizer = 'adam', metrics = ['acc'])
model.fit (X_train, trainy_enc, batch_size=10, shuffle=True, epochs= 100,
validation_data=(X_test,testy_enc), callbacks = [early_stopping_monitor], verbose = 1)
# evaluate the model
_, test_acc = model.evaluate(X_test, testy_enc, verbose=1)

return model, test_acc

for train_iX, test_iX in kfold.split(X):
X_train, y_train = X[train_iX], y[train_iX]
X_test, y_test = X[test_iX], y[test_iX]
#Class imbalance is too severe. No Fault prevails. Using smote to balance out electrical and mechanical faults
from imblearn.over_sampling import SMOTE
sm = SMOTE (random_state = 12)
X_train,y_train = sm.fit_resample(X_train,y_train)
X_train, y_train = utils.shuffle(X_train, y_train, random_state=42)
X_train, X_test = feature_selection (X_train, X_test, None, 'PCA', None)
model, test_acc = evaluate_model(X_train, y_train, X_test, y_test)
scores.append(test_acc)
members.append(model)


My PCA function is the following:



 pca = PCA (0.95)
pca.fit(X_train)
X_train_pca = pca.transform(X_train)
X_test_pca = pca.transform(X_test)
return X_train_pca, X_test_pca


Any suggestions will be appreciated.







python keras time-series overfitting






share|improve this question









New contributor




eemamedo is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.











share|improve this question









New contributor




eemamedo is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.









share|improve this question




share|improve this question








edited Mar 21 at 18:48







eemamedo













New contributor




eemamedo is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.









asked Mar 21 at 18:39









eemamedoeemamedo

62




62




New contributor




eemamedo is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.





New contributor





eemamedo is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.






eemamedo is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.











  • $begingroup$
    Could you provide more information on your dataset? You are trying to resolve the problem by SMOTE. How unbalanced is your data set? The results suggest a huge imbalance in your data set.
    $endgroup$
    – MachineLearner
    Mar 22 at 9:22











  • $begingroup$
    Yes. I have a time-series dataset. I have constructed two separate datasets: no faults and faulty ones. The imbalance is following: No fault (0) is 43819 datapoints, 1 (electrical faults) is 581 datapoints, 2 (mechanical faults) is 47 datapoints. I balance out using SMOTE
    $endgroup$
    – eemamedo
    Mar 22 at 13:35
















  • $begingroup$
    Could you provide more information on your dataset? You are trying to resolve the problem by SMOTE. How unbalanced is your data set? The results suggest a huge imbalance in your data set.
    $endgroup$
    – MachineLearner
    Mar 22 at 9:22











  • $begingroup$
    Yes. I have a time-series dataset. I have constructed two separate datasets: no faults and faulty ones. The imbalance is following: No fault (0) is 43819 datapoints, 1 (electrical faults) is 581 datapoints, 2 (mechanical faults) is 47 datapoints. I balance out using SMOTE
    $endgroup$
    – eemamedo
    Mar 22 at 13:35















$begingroup$
Could you provide more information on your dataset? You are trying to resolve the problem by SMOTE. How unbalanced is your data set? The results suggest a huge imbalance in your data set.
$endgroup$
– MachineLearner
Mar 22 at 9:22





$begingroup$
Could you provide more information on your dataset? You are trying to resolve the problem by SMOTE. How unbalanced is your data set? The results suggest a huge imbalance in your data set.
$endgroup$
– MachineLearner
Mar 22 at 9:22













$begingroup$
Yes. I have a time-series dataset. I have constructed two separate datasets: no faults and faulty ones. The imbalance is following: No fault (0) is 43819 datapoints, 1 (electrical faults) is 581 datapoints, 2 (mechanical faults) is 47 datapoints. I balance out using SMOTE
$endgroup$
– eemamedo
Mar 22 at 13:35




$begingroup$
Yes. I have a time-series dataset. I have constructed two separate datasets: no faults and faulty ones. The imbalance is following: No fault (0) is 43819 datapoints, 1 (electrical faults) is 581 datapoints, 2 (mechanical faults) is 47 datapoints. I balance out using SMOTE
$endgroup$
– eemamedo
Mar 22 at 13:35










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