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InvalidArgumentError: incompatible shapes: [32,153] vs [32,5] , when using VAE


Retain similarity distances when using an autoencoder for dimensionality reductionGeneral unsupervised learning strategy when using convolutional autoencoder (CAE)Keras VAE example loss functionHow to set input for proper fit with lstm?What mu and sigma vector really mean in VAE?KL divergence in VAEVariational auto-encoders (VAE): why the random sample?Understanding ELBO Learning Dynamics for VAE?Using VAE with Sequence to Sequence ApproachWhy use Variational Autoencoders VAE insted of Autoencoders AE in Anomaly Detection?













0












$begingroup$


I'm working on a sequence to sequence model using LSTM, the model worked perfectly with an autoencoder, but when I try to use a Variational autoencoder by adding the mean and deviation layer and changing the loss function , I get this error:




InvalidArgumentError: Incompatible shapes: [32,153] vs [32,5]




 # Train - Test Split
X, y = lines.eng, lines.fr
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size =
0.1)

def generate_batch(X = X_train, y = y_train, batch_size = 32):
''' Generate a batch of data '''
while True:
for j in range(0, len(X), batch_size):
encoder_input_data = np.zeros((batch_size
,max_len_eng),dtype='float32') #max_len_eng = 3
decoder_input_data = np.zeros((batch_size,
max_len_fr),dtype='float32')
#max_len_french =5
decoder_target_data = np.zeros((batch_size,max_len_fr,
num_decoder_tokens), dtype='float32')

for i, (input_text, target_text) in
enumerate(zip(X[j:j+batch_size], y[j:j+batch_size])):
for t, word in enumerate(input_text.split()):
encoder_input_data[i, t] = input_token_index[word]
for t, word in enumerate(target_text.split()):
# decoder_target_data is ahead of decoder_input_data by one timestep
if t<len(target_text.split())-1:
decoder_input_data[i, t] =
target_token_index[word]
if t > 0:
# decoder_target_data will be ahead by one timestep
# and will not include the start character.
decoder_target_data[i, t - 1,
target_token_index[word]] = 1
yield([encoder_input_data, decoder_input_data],
decoder_target_data)

encoder_inputs = Input(shape=(None,))
en_x= Embedding(num_encoder_tokens, embedding_size,mask_zero = True)
(encoder_inputs)
encoder = LSTM(50, return_state=True)
encoder_outputs, state_h, state_c = encoder(en_x) #initialisé à 0
encoder_states = [state_h, state_c]

""" -------- ADD VAE -------"""
latent_dim =embedding_size
# output layer for mean and log variance
z_mu = Dense(latent_dim)(encoder_outputs) #remplacer h
z_log_var = Dense(latent_dim)(encoder_outputs)
def sampling(args):
batch_size=1
z_mean, z_log_sigma = args
epsilon = K.random_normal(shape=(batch_size, latent_dim),
mean=0., stddev=1.)
return z_mean + K.exp(z_log_sigma) * epsilon

z = Lambda(sampling, output_shape=(latent_dim,))([z_mu, z_log_var])

state_h= z
state_c = z
encoder_states = [state_h, state_c]
#loss function with VAE
def vae_loss(y_true, y_pred):
""" Calculate loss = reconstruction loss + KL loss for each data in
minibatch """
# E[log P(X|z)]
recon = K.sum(K.binary_crossentropy(y_pred, y_true), axis=1)
# D_KL(Q(z|X) || P(z|X)); calculate in closed form as both dist.
are Gaussian
kl = 0.5 * K.sum(K.exp(z_log_var) + K.square(z_mu) - 1. -
z_log_var, axis=1)
return recon + kl[:, None]


# Set up the decoder, using `encoder_states` as initial state.
decoder_inputs = Input(shape=(None,))
dex= Embedding(num_decoder_tokens, embedding_size,mask_zero = True)
#num_decoder_tokens = 152
final_dex= dex(decoder_inputs)
decoder_lstm = LSTM(50, return_sequences=True, return_state=True)
decoder_outputs, _, _ =
decoder_lstm(final_dex,initial_state=encoder_states)
decoder_dense = Dense(num_decoder_tokens, activation='softmax')
decoder_outputs = decoder_dense(decoder_outputs)
model = Model([encoder_inputs, decoder_inputs], decoder_outputs)
model.compile(optimizer='rmsprop', loss=vae_loss, metrics=['acc'])
model.summary()
train_samples = len(X_train)
val_samples = len(X_test)
batch_size = 32
epochs = 5
model.fit_generator(generator = generate_batch(X_train, y_train,
batch_size = batch_size),
steps_per_epoch = train_samples//batch_size,
epochs=epochs,
validation_data = generate_batch(X_test, y_test,
batch_size = batch_size),
validation_steps = 1)

end = time.time()
print("temp d'exec:", end-start)


I tried all solutions suggested on other posts, but no one helped me.
Thanks.










share|improve this question









$endgroup$
















    0












    $begingroup$


    I'm working on a sequence to sequence model using LSTM, the model worked perfectly with an autoencoder, but when I try to use a Variational autoencoder by adding the mean and deviation layer and changing the loss function , I get this error:




    InvalidArgumentError: Incompatible shapes: [32,153] vs [32,5]




     # Train - Test Split
    X, y = lines.eng, lines.fr
    X_train, X_test, y_train, y_test = train_test_split(X, y, test_size =
    0.1)

    def generate_batch(X = X_train, y = y_train, batch_size = 32):
    ''' Generate a batch of data '''
    while True:
    for j in range(0, len(X), batch_size):
    encoder_input_data = np.zeros((batch_size
    ,max_len_eng),dtype='float32') #max_len_eng = 3
    decoder_input_data = np.zeros((batch_size,
    max_len_fr),dtype='float32')
    #max_len_french =5
    decoder_target_data = np.zeros((batch_size,max_len_fr,
    num_decoder_tokens), dtype='float32')

    for i, (input_text, target_text) in
    enumerate(zip(X[j:j+batch_size], y[j:j+batch_size])):
    for t, word in enumerate(input_text.split()):
    encoder_input_data[i, t] = input_token_index[word]
    for t, word in enumerate(target_text.split()):
    # decoder_target_data is ahead of decoder_input_data by one timestep
    if t<len(target_text.split())-1:
    decoder_input_data[i, t] =
    target_token_index[word]
    if t > 0:
    # decoder_target_data will be ahead by one timestep
    # and will not include the start character.
    decoder_target_data[i, t - 1,
    target_token_index[word]] = 1
    yield([encoder_input_data, decoder_input_data],
    decoder_target_data)

    encoder_inputs = Input(shape=(None,))
    en_x= Embedding(num_encoder_tokens, embedding_size,mask_zero = True)
    (encoder_inputs)
    encoder = LSTM(50, return_state=True)
    encoder_outputs, state_h, state_c = encoder(en_x) #initialisé à 0
    encoder_states = [state_h, state_c]

    """ -------- ADD VAE -------"""
    latent_dim =embedding_size
    # output layer for mean and log variance
    z_mu = Dense(latent_dim)(encoder_outputs) #remplacer h
    z_log_var = Dense(latent_dim)(encoder_outputs)
    def sampling(args):
    batch_size=1
    z_mean, z_log_sigma = args
    epsilon = K.random_normal(shape=(batch_size, latent_dim),
    mean=0., stddev=1.)
    return z_mean + K.exp(z_log_sigma) * epsilon

    z = Lambda(sampling, output_shape=(latent_dim,))([z_mu, z_log_var])

    state_h= z
    state_c = z
    encoder_states = [state_h, state_c]
    #loss function with VAE
    def vae_loss(y_true, y_pred):
    """ Calculate loss = reconstruction loss + KL loss for each data in
    minibatch """
    # E[log P(X|z)]
    recon = K.sum(K.binary_crossentropy(y_pred, y_true), axis=1)
    # D_KL(Q(z|X) || P(z|X)); calculate in closed form as both dist.
    are Gaussian
    kl = 0.5 * K.sum(K.exp(z_log_var) + K.square(z_mu) - 1. -
    z_log_var, axis=1)
    return recon + kl[:, None]


    # Set up the decoder, using `encoder_states` as initial state.
    decoder_inputs = Input(shape=(None,))
    dex= Embedding(num_decoder_tokens, embedding_size,mask_zero = True)
    #num_decoder_tokens = 152
    final_dex= dex(decoder_inputs)
    decoder_lstm = LSTM(50, return_sequences=True, return_state=True)
    decoder_outputs, _, _ =
    decoder_lstm(final_dex,initial_state=encoder_states)
    decoder_dense = Dense(num_decoder_tokens, activation='softmax')
    decoder_outputs = decoder_dense(decoder_outputs)
    model = Model([encoder_inputs, decoder_inputs], decoder_outputs)
    model.compile(optimizer='rmsprop', loss=vae_loss, metrics=['acc'])
    model.summary()
    train_samples = len(X_train)
    val_samples = len(X_test)
    batch_size = 32
    epochs = 5
    model.fit_generator(generator = generate_batch(X_train, y_train,
    batch_size = batch_size),
    steps_per_epoch = train_samples//batch_size,
    epochs=epochs,
    validation_data = generate_batch(X_test, y_test,
    batch_size = batch_size),
    validation_steps = 1)

    end = time.time()
    print("temp d'exec:", end-start)


    I tried all solutions suggested on other posts, but no one helped me.
    Thanks.










    share|improve this question









    $endgroup$














      0












      0








      0





      $begingroup$


      I'm working on a sequence to sequence model using LSTM, the model worked perfectly with an autoencoder, but when I try to use a Variational autoencoder by adding the mean and deviation layer and changing the loss function , I get this error:




      InvalidArgumentError: Incompatible shapes: [32,153] vs [32,5]




       # Train - Test Split
      X, y = lines.eng, lines.fr
      X_train, X_test, y_train, y_test = train_test_split(X, y, test_size =
      0.1)

      def generate_batch(X = X_train, y = y_train, batch_size = 32):
      ''' Generate a batch of data '''
      while True:
      for j in range(0, len(X), batch_size):
      encoder_input_data = np.zeros((batch_size
      ,max_len_eng),dtype='float32') #max_len_eng = 3
      decoder_input_data = np.zeros((batch_size,
      max_len_fr),dtype='float32')
      #max_len_french =5
      decoder_target_data = np.zeros((batch_size,max_len_fr,
      num_decoder_tokens), dtype='float32')

      for i, (input_text, target_text) in
      enumerate(zip(X[j:j+batch_size], y[j:j+batch_size])):
      for t, word in enumerate(input_text.split()):
      encoder_input_data[i, t] = input_token_index[word]
      for t, word in enumerate(target_text.split()):
      # decoder_target_data is ahead of decoder_input_data by one timestep
      if t<len(target_text.split())-1:
      decoder_input_data[i, t] =
      target_token_index[word]
      if t > 0:
      # decoder_target_data will be ahead by one timestep
      # and will not include the start character.
      decoder_target_data[i, t - 1,
      target_token_index[word]] = 1
      yield([encoder_input_data, decoder_input_data],
      decoder_target_data)

      encoder_inputs = Input(shape=(None,))
      en_x= Embedding(num_encoder_tokens, embedding_size,mask_zero = True)
      (encoder_inputs)
      encoder = LSTM(50, return_state=True)
      encoder_outputs, state_h, state_c = encoder(en_x) #initialisé à 0
      encoder_states = [state_h, state_c]

      """ -------- ADD VAE -------"""
      latent_dim =embedding_size
      # output layer for mean and log variance
      z_mu = Dense(latent_dim)(encoder_outputs) #remplacer h
      z_log_var = Dense(latent_dim)(encoder_outputs)
      def sampling(args):
      batch_size=1
      z_mean, z_log_sigma = args
      epsilon = K.random_normal(shape=(batch_size, latent_dim),
      mean=0., stddev=1.)
      return z_mean + K.exp(z_log_sigma) * epsilon

      z = Lambda(sampling, output_shape=(latent_dim,))([z_mu, z_log_var])

      state_h= z
      state_c = z
      encoder_states = [state_h, state_c]
      #loss function with VAE
      def vae_loss(y_true, y_pred):
      """ Calculate loss = reconstruction loss + KL loss for each data in
      minibatch """
      # E[log P(X|z)]
      recon = K.sum(K.binary_crossentropy(y_pred, y_true), axis=1)
      # D_KL(Q(z|X) || P(z|X)); calculate in closed form as both dist.
      are Gaussian
      kl = 0.5 * K.sum(K.exp(z_log_var) + K.square(z_mu) - 1. -
      z_log_var, axis=1)
      return recon + kl[:, None]


      # Set up the decoder, using `encoder_states` as initial state.
      decoder_inputs = Input(shape=(None,))
      dex= Embedding(num_decoder_tokens, embedding_size,mask_zero = True)
      #num_decoder_tokens = 152
      final_dex= dex(decoder_inputs)
      decoder_lstm = LSTM(50, return_sequences=True, return_state=True)
      decoder_outputs, _, _ =
      decoder_lstm(final_dex,initial_state=encoder_states)
      decoder_dense = Dense(num_decoder_tokens, activation='softmax')
      decoder_outputs = decoder_dense(decoder_outputs)
      model = Model([encoder_inputs, decoder_inputs], decoder_outputs)
      model.compile(optimizer='rmsprop', loss=vae_loss, metrics=['acc'])
      model.summary()
      train_samples = len(X_train)
      val_samples = len(X_test)
      batch_size = 32
      epochs = 5
      model.fit_generator(generator = generate_batch(X_train, y_train,
      batch_size = batch_size),
      steps_per_epoch = train_samples//batch_size,
      epochs=epochs,
      validation_data = generate_batch(X_test, y_test,
      batch_size = batch_size),
      validation_steps = 1)

      end = time.time()
      print("temp d'exec:", end-start)


      I tried all solutions suggested on other posts, but no one helped me.
      Thanks.










      share|improve this question









      $endgroup$




      I'm working on a sequence to sequence model using LSTM, the model worked perfectly with an autoencoder, but when I try to use a Variational autoencoder by adding the mean and deviation layer and changing the loss function , I get this error:




      InvalidArgumentError: Incompatible shapes: [32,153] vs [32,5]




       # Train - Test Split
      X, y = lines.eng, lines.fr
      X_train, X_test, y_train, y_test = train_test_split(X, y, test_size =
      0.1)

      def generate_batch(X = X_train, y = y_train, batch_size = 32):
      ''' Generate a batch of data '''
      while True:
      for j in range(0, len(X), batch_size):
      encoder_input_data = np.zeros((batch_size
      ,max_len_eng),dtype='float32') #max_len_eng = 3
      decoder_input_data = np.zeros((batch_size,
      max_len_fr),dtype='float32')
      #max_len_french =5
      decoder_target_data = np.zeros((batch_size,max_len_fr,
      num_decoder_tokens), dtype='float32')

      for i, (input_text, target_text) in
      enumerate(zip(X[j:j+batch_size], y[j:j+batch_size])):
      for t, word in enumerate(input_text.split()):
      encoder_input_data[i, t] = input_token_index[word]
      for t, word in enumerate(target_text.split()):
      # decoder_target_data is ahead of decoder_input_data by one timestep
      if t<len(target_text.split())-1:
      decoder_input_data[i, t] =
      target_token_index[word]
      if t > 0:
      # decoder_target_data will be ahead by one timestep
      # and will not include the start character.
      decoder_target_data[i, t - 1,
      target_token_index[word]] = 1
      yield([encoder_input_data, decoder_input_data],
      decoder_target_data)

      encoder_inputs = Input(shape=(None,))
      en_x= Embedding(num_encoder_tokens, embedding_size,mask_zero = True)
      (encoder_inputs)
      encoder = LSTM(50, return_state=True)
      encoder_outputs, state_h, state_c = encoder(en_x) #initialisé à 0
      encoder_states = [state_h, state_c]

      """ -------- ADD VAE -------"""
      latent_dim =embedding_size
      # output layer for mean and log variance
      z_mu = Dense(latent_dim)(encoder_outputs) #remplacer h
      z_log_var = Dense(latent_dim)(encoder_outputs)
      def sampling(args):
      batch_size=1
      z_mean, z_log_sigma = args
      epsilon = K.random_normal(shape=(batch_size, latent_dim),
      mean=0., stddev=1.)
      return z_mean + K.exp(z_log_sigma) * epsilon

      z = Lambda(sampling, output_shape=(latent_dim,))([z_mu, z_log_var])

      state_h= z
      state_c = z
      encoder_states = [state_h, state_c]
      #loss function with VAE
      def vae_loss(y_true, y_pred):
      """ Calculate loss = reconstruction loss + KL loss for each data in
      minibatch """
      # E[log P(X|z)]
      recon = K.sum(K.binary_crossentropy(y_pred, y_true), axis=1)
      # D_KL(Q(z|X) || P(z|X)); calculate in closed form as both dist.
      are Gaussian
      kl = 0.5 * K.sum(K.exp(z_log_var) + K.square(z_mu) - 1. -
      z_log_var, axis=1)
      return recon + kl[:, None]


      # Set up the decoder, using `encoder_states` as initial state.
      decoder_inputs = Input(shape=(None,))
      dex= Embedding(num_decoder_tokens, embedding_size,mask_zero = True)
      #num_decoder_tokens = 152
      final_dex= dex(decoder_inputs)
      decoder_lstm = LSTM(50, return_sequences=True, return_state=True)
      decoder_outputs, _, _ =
      decoder_lstm(final_dex,initial_state=encoder_states)
      decoder_dense = Dense(num_decoder_tokens, activation='softmax')
      decoder_outputs = decoder_dense(decoder_outputs)
      model = Model([encoder_inputs, decoder_inputs], decoder_outputs)
      model.compile(optimizer='rmsprop', loss=vae_loss, metrics=['acc'])
      model.summary()
      train_samples = len(X_train)
      val_samples = len(X_test)
      batch_size = 32
      epochs = 5
      model.fit_generator(generator = generate_batch(X_train, y_train,
      batch_size = batch_size),
      steps_per_epoch = train_samples//batch_size,
      epochs=epochs,
      validation_data = generate_batch(X_test, y_test,
      batch_size = batch_size),
      validation_steps = 1)

      end = time.time()
      print("temp d'exec:", end-start)


      I tried all solutions suggested on other posts, but no one helped me.
      Thanks.







      python neural-network lstm autoencoder vae






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Apr 9 at 15:04









      KikioKikio

      9110




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