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Cannot Obtain Similar DL Prediction Result in Pytorch C++ API Compared to Python



Unicorn Meta Zoo #1: Why another podcast?
Announcing the arrival of Valued Associate #679: Cesar Manara
2019 Moderator Election Q&A - Questionnaire
2019 Community Moderator Election ResultsPython plot for confusion matrix similar to confusion wheel?Understanding ConfusionMatrix for Google Prediction APIPython svm classification, result vs amount of features not as expectedCannot get the prediction right using Stochastic Gradient Descent: Always predicts 1I do not understand the prediction result of the CNN modelAre view() in Pytorch and reshape() in Numpy similar?How to use Cross Entropy loss in pytorch for binary prediction?How to use Cross Entropy loss in pytorch for binary prediction?How standardizing and/or log transformation affect prediction result in machine learning models










0












$begingroup$


I have trained a deep learning model using unet architecture in order to segment the nuclei in python and pytorch. I would like to load this pretrained model and make prediction in C++. For this reason, I obtained trace file(with pt extension). Then, I have run this code:



 #include <iostream>

#include <torch/script.h> // One-stop header.

#include <iostream>
#include <memory>

#include <opencv2/core/core.hpp>
#include <opencv2/highgui/highgui.hpp>


using namespace cv;


int main(int argc, const char* argv[])


Mat image;
image = imread("C:/Users/Sercan/PycharmProjects/samplepyTorch/test_2.png", CV_LOAD_IMAGE_COLOR);

std::shared_ptr<torch::jit::script::Module> module = torch::jit::load("C:/Users/Sercan/PycharmProjects/samplepyTorch/epistroma_unet_best_model_trace.pt");
module->to(torch::kCUDA);


std::vector<int64_t> sizes = 1, 3, image.rows, image.cols ;
torch::TensorOptions options(torch::ScalarType::Byte);
torch::Tensor tensor_image = torch::from_blob(image.data, torch::IntList(sizes), options);
tensor_image = tensor_image.toType(torch::kFloat);
auto result = module->forward( tensor_image.to(at::kCUDA) ).toTensor();


result = result.squeeze().cpu();
result = at::sigmoid(result);

cv::Mat img_out(image.rows, image.cols, CV_32F, result.data<float>());

cv::imwrite("img_out.png", img_out);




Image outputs ( First image: test image, Second image: Python prediction result, Third image: C++ prediction result):



enter image description here



As you see, C++ prediction output is not similar to python prediction output. Could you offer a solution to fix this problem?










share|improve this question











$endgroup$
















    0












    $begingroup$


    I have trained a deep learning model using unet architecture in order to segment the nuclei in python and pytorch. I would like to load this pretrained model and make prediction in C++. For this reason, I obtained trace file(with pt extension). Then, I have run this code:



     #include <iostream>

    #include <torch/script.h> // One-stop header.

    #include <iostream>
    #include <memory>

    #include <opencv2/core/core.hpp>
    #include <opencv2/highgui/highgui.hpp>


    using namespace cv;


    int main(int argc, const char* argv[])


    Mat image;
    image = imread("C:/Users/Sercan/PycharmProjects/samplepyTorch/test_2.png", CV_LOAD_IMAGE_COLOR);

    std::shared_ptr<torch::jit::script::Module> module = torch::jit::load("C:/Users/Sercan/PycharmProjects/samplepyTorch/epistroma_unet_best_model_trace.pt");
    module->to(torch::kCUDA);


    std::vector<int64_t> sizes = 1, 3, image.rows, image.cols ;
    torch::TensorOptions options(torch::ScalarType::Byte);
    torch::Tensor tensor_image = torch::from_blob(image.data, torch::IntList(sizes), options);
    tensor_image = tensor_image.toType(torch::kFloat);
    auto result = module->forward( tensor_image.to(at::kCUDA) ).toTensor();


    result = result.squeeze().cpu();
    result = at::sigmoid(result);

    cv::Mat img_out(image.rows, image.cols, CV_32F, result.data<float>());

    cv::imwrite("img_out.png", img_out);




    Image outputs ( First image: test image, Second image: Python prediction result, Third image: C++ prediction result):



    enter image description here



    As you see, C++ prediction output is not similar to python prediction output. Could you offer a solution to fix this problem?










    share|improve this question











    $endgroup$














      0












      0








      0





      $begingroup$


      I have trained a deep learning model using unet architecture in order to segment the nuclei in python and pytorch. I would like to load this pretrained model and make prediction in C++. For this reason, I obtained trace file(with pt extension). Then, I have run this code:



       #include <iostream>

      #include <torch/script.h> // One-stop header.

      #include <iostream>
      #include <memory>

      #include <opencv2/core/core.hpp>
      #include <opencv2/highgui/highgui.hpp>


      using namespace cv;


      int main(int argc, const char* argv[])


      Mat image;
      image = imread("C:/Users/Sercan/PycharmProjects/samplepyTorch/test_2.png", CV_LOAD_IMAGE_COLOR);

      std::shared_ptr<torch::jit::script::Module> module = torch::jit::load("C:/Users/Sercan/PycharmProjects/samplepyTorch/epistroma_unet_best_model_trace.pt");
      module->to(torch::kCUDA);


      std::vector<int64_t> sizes = 1, 3, image.rows, image.cols ;
      torch::TensorOptions options(torch::ScalarType::Byte);
      torch::Tensor tensor_image = torch::from_blob(image.data, torch::IntList(sizes), options);
      tensor_image = tensor_image.toType(torch::kFloat);
      auto result = module->forward( tensor_image.to(at::kCUDA) ).toTensor();


      result = result.squeeze().cpu();
      result = at::sigmoid(result);

      cv::Mat img_out(image.rows, image.cols, CV_32F, result.data<float>());

      cv::imwrite("img_out.png", img_out);




      Image outputs ( First image: test image, Second image: Python prediction result, Third image: C++ prediction result):



      enter image description here



      As you see, C++ prediction output is not similar to python prediction output. Could you offer a solution to fix this problem?










      share|improve this question











      $endgroup$




      I have trained a deep learning model using unet architecture in order to segment the nuclei in python and pytorch. I would like to load this pretrained model and make prediction in C++. For this reason, I obtained trace file(with pt extension). Then, I have run this code:



       #include <iostream>

      #include <torch/script.h> // One-stop header.

      #include <iostream>
      #include <memory>

      #include <opencv2/core/core.hpp>
      #include <opencv2/highgui/highgui.hpp>


      using namespace cv;


      int main(int argc, const char* argv[])


      Mat image;
      image = imread("C:/Users/Sercan/PycharmProjects/samplepyTorch/test_2.png", CV_LOAD_IMAGE_COLOR);

      std::shared_ptr<torch::jit::script::Module> module = torch::jit::load("C:/Users/Sercan/PycharmProjects/samplepyTorch/epistroma_unet_best_model_trace.pt");
      module->to(torch::kCUDA);


      std::vector<int64_t> sizes = 1, 3, image.rows, image.cols ;
      torch::TensorOptions options(torch::ScalarType::Byte);
      torch::Tensor tensor_image = torch::from_blob(image.data, torch::IntList(sizes), options);
      tensor_image = tensor_image.toType(torch::kFloat);
      auto result = module->forward( tensor_image.to(at::kCUDA) ).toTensor();


      result = result.squeeze().cpu();
      result = at::sigmoid(result);

      cv::Mat img_out(image.rows, image.cols, CV_32F, result.data<float>());

      cv::imwrite("img_out.png", img_out);




      Image outputs ( First image: test image, Second image: Python prediction result, Third image: C++ prediction result):



      enter image description here



      As you see, C++ prediction output is not similar to python prediction output. Could you offer a solution to fix this problem?







      machine-learning deep-learning computer-vision pytorch






      share|improve this question















      share|improve this question













      share|improve this question




      share|improve this question








      edited Apr 6 at 7:55







      michael scolfield

















      asked Apr 6 at 7:20









      michael scolfieldmichael scolfield

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