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Understanding How to Shape Data for ConvLSTM2D in Keras



The Next CEO of Stack Overflow
2019 Community Moderator ElectionMy first machine learning experiment , model not converging , tips?Understand the shape of this Convolutional Neural NetworkMy Keras bidirectional LSTM model is giving terrible predictionsTraining Accuracy stuck in KerasRecurrent Neural Net (LSTM) batch size and inputUnderstanding Timestamps and Batchsize of Keras LSTM considering Hiddenstates and TBPTTKeras input shape errorUnderstanding LSTM input shape for kerasKeras/TF: Making sure image training data shape is accurate for Time Distributed CNN+LSTMLSTM - Forecasting usage (real world)










0












$begingroup$


Data: I have a spatio-temporal dataset which is approximately 5 years worth of crime data for New York City. This has been aggregated into a space-time grid so that the three dimensions of the matrix are longitude and latitude grid cells, and the time-frame. For this question let us say that there are 50x50 cells overlaid on the area and 100 time-frames for this question. So matrix dimensions are (50, 50, 100) and the cell value is the crime count.



Aim: I want to feed in data one time-frame at a time (as it becomes available) to predict the next timeframe.



Question: How should I shape the data for input as I am struggling on the understanding of how to make these forecasts and what data should be available/fed in?



Currently: Since the ConvLSTM2D Layer takes the following input (#Samples, Frame, Row, Col, Channel). I have reshaped as follows: (1, 100, 50, 50, 1) where I have a single video sample, which contains 100 frames, 50 rows and columns and a single channel. With x, y datasets as arr[:,:-1,:,:,:] and arr[:,1:,:,:,:] respectively.



Model I have created (might be wrong):



def createConvLSTMModel(dim0, dim1, dim2):

#Create the model
model = Sequential()

## Add layers to the model
#Add the first convolutional LSTM unit (with input)
model.add(ConvLSTM2D(filters=32,
kernel_size=(3, 3),
kernel_initializer='glorot_uniform',
strides=(1,1),
activation='relu',
batch_input_shape=(None, dim1, dim2, 1),
padding='same',
#stateful=True,
return_sequences=True))
#Perform batch normalisation
model.add(BatchNormalization())

#Add the second convolutional LSTM unit
model.add(ConvLSTM2D(filters=32,
kernel_size=(3, 3),
kernel_initializer='glorot_uniform',
strides=(1,1),
activation='relu',
padding='same',
#stateful=True,
return_sequences=True))
#Perform batch normalisation
model.add(BatchNormalization())


#Add the third convolutional LSTM unit
model.add(ConvLSTM2D(filters=64,
kernel_size=(3, 3),
kernel_initializer='glorot_uniform',
strides=(1,1),
activation='relu',
padding='same',
#stateful=True,
return_sequences=True))
#Perform batch normalisation
model.add(BatchNormalization())

#Add the fourth convolutional LSTM unit
model.add(ConvLSTM2D(filters=64,
kernel_size=(3, 3),
kernel_initializer='glorot_uniform',
strides=(1,1),
activation='relu',
padding='same',
#stateful=True,
return_sequences=True))
#Perform batch normalisation
model.add(BatchNormalization())

#Add a final 3D convolution Layer
model.add(Conv3D(filters=1, kernel_size=(3, 3, 3),
activation='sigmoid',
padding='same', data_format='channels_last'))

#Configure the model for training
model.compile(loss='binary_crossentropy', optimizer='adadelta')

#Return the model
return(model)
```









share|improve this question









$endgroup$
















    0












    $begingroup$


    Data: I have a spatio-temporal dataset which is approximately 5 years worth of crime data for New York City. This has been aggregated into a space-time grid so that the three dimensions of the matrix are longitude and latitude grid cells, and the time-frame. For this question let us say that there are 50x50 cells overlaid on the area and 100 time-frames for this question. So matrix dimensions are (50, 50, 100) and the cell value is the crime count.



    Aim: I want to feed in data one time-frame at a time (as it becomes available) to predict the next timeframe.



    Question: How should I shape the data for input as I am struggling on the understanding of how to make these forecasts and what data should be available/fed in?



    Currently: Since the ConvLSTM2D Layer takes the following input (#Samples, Frame, Row, Col, Channel). I have reshaped as follows: (1, 100, 50, 50, 1) where I have a single video sample, which contains 100 frames, 50 rows and columns and a single channel. With x, y datasets as arr[:,:-1,:,:,:] and arr[:,1:,:,:,:] respectively.



    Model I have created (might be wrong):



    def createConvLSTMModel(dim0, dim1, dim2):

    #Create the model
    model = Sequential()

    ## Add layers to the model
    #Add the first convolutional LSTM unit (with input)
    model.add(ConvLSTM2D(filters=32,
    kernel_size=(3, 3),
    kernel_initializer='glorot_uniform',
    strides=(1,1),
    activation='relu',
    batch_input_shape=(None, dim1, dim2, 1),
    padding='same',
    #stateful=True,
    return_sequences=True))
    #Perform batch normalisation
    model.add(BatchNormalization())

    #Add the second convolutional LSTM unit
    model.add(ConvLSTM2D(filters=32,
    kernel_size=(3, 3),
    kernel_initializer='glorot_uniform',
    strides=(1,1),
    activation='relu',
    padding='same',
    #stateful=True,
    return_sequences=True))
    #Perform batch normalisation
    model.add(BatchNormalization())


    #Add the third convolutional LSTM unit
    model.add(ConvLSTM2D(filters=64,
    kernel_size=(3, 3),
    kernel_initializer='glorot_uniform',
    strides=(1,1),
    activation='relu',
    padding='same',
    #stateful=True,
    return_sequences=True))
    #Perform batch normalisation
    model.add(BatchNormalization())

    #Add the fourth convolutional LSTM unit
    model.add(ConvLSTM2D(filters=64,
    kernel_size=(3, 3),
    kernel_initializer='glorot_uniform',
    strides=(1,1),
    activation='relu',
    padding='same',
    #stateful=True,
    return_sequences=True))
    #Perform batch normalisation
    model.add(BatchNormalization())

    #Add a final 3D convolution Layer
    model.add(Conv3D(filters=1, kernel_size=(3, 3, 3),
    activation='sigmoid',
    padding='same', data_format='channels_last'))

    #Configure the model for training
    model.compile(loss='binary_crossentropy', optimizer='adadelta')

    #Return the model
    return(model)
    ```









    share|improve this question









    $endgroup$














      0












      0








      0





      $begingroup$


      Data: I have a spatio-temporal dataset which is approximately 5 years worth of crime data for New York City. This has been aggregated into a space-time grid so that the three dimensions of the matrix are longitude and latitude grid cells, and the time-frame. For this question let us say that there are 50x50 cells overlaid on the area and 100 time-frames for this question. So matrix dimensions are (50, 50, 100) and the cell value is the crime count.



      Aim: I want to feed in data one time-frame at a time (as it becomes available) to predict the next timeframe.



      Question: How should I shape the data for input as I am struggling on the understanding of how to make these forecasts and what data should be available/fed in?



      Currently: Since the ConvLSTM2D Layer takes the following input (#Samples, Frame, Row, Col, Channel). I have reshaped as follows: (1, 100, 50, 50, 1) where I have a single video sample, which contains 100 frames, 50 rows and columns and a single channel. With x, y datasets as arr[:,:-1,:,:,:] and arr[:,1:,:,:,:] respectively.



      Model I have created (might be wrong):



      def createConvLSTMModel(dim0, dim1, dim2):

      #Create the model
      model = Sequential()

      ## Add layers to the model
      #Add the first convolutional LSTM unit (with input)
      model.add(ConvLSTM2D(filters=32,
      kernel_size=(3, 3),
      kernel_initializer='glorot_uniform',
      strides=(1,1),
      activation='relu',
      batch_input_shape=(None, dim1, dim2, 1),
      padding='same',
      #stateful=True,
      return_sequences=True))
      #Perform batch normalisation
      model.add(BatchNormalization())

      #Add the second convolutional LSTM unit
      model.add(ConvLSTM2D(filters=32,
      kernel_size=(3, 3),
      kernel_initializer='glorot_uniform',
      strides=(1,1),
      activation='relu',
      padding='same',
      #stateful=True,
      return_sequences=True))
      #Perform batch normalisation
      model.add(BatchNormalization())


      #Add the third convolutional LSTM unit
      model.add(ConvLSTM2D(filters=64,
      kernel_size=(3, 3),
      kernel_initializer='glorot_uniform',
      strides=(1,1),
      activation='relu',
      padding='same',
      #stateful=True,
      return_sequences=True))
      #Perform batch normalisation
      model.add(BatchNormalization())

      #Add the fourth convolutional LSTM unit
      model.add(ConvLSTM2D(filters=64,
      kernel_size=(3, 3),
      kernel_initializer='glorot_uniform',
      strides=(1,1),
      activation='relu',
      padding='same',
      #stateful=True,
      return_sequences=True))
      #Perform batch normalisation
      model.add(BatchNormalization())

      #Add a final 3D convolution Layer
      model.add(Conv3D(filters=1, kernel_size=(3, 3, 3),
      activation='sigmoid',
      padding='same', data_format='channels_last'))

      #Configure the model for training
      model.compile(loss='binary_crossentropy', optimizer='adadelta')

      #Return the model
      return(model)
      ```









      share|improve this question









      $endgroup$




      Data: I have a spatio-temporal dataset which is approximately 5 years worth of crime data for New York City. This has been aggregated into a space-time grid so that the three dimensions of the matrix are longitude and latitude grid cells, and the time-frame. For this question let us say that there are 50x50 cells overlaid on the area and 100 time-frames for this question. So matrix dimensions are (50, 50, 100) and the cell value is the crime count.



      Aim: I want to feed in data one time-frame at a time (as it becomes available) to predict the next timeframe.



      Question: How should I shape the data for input as I am struggling on the understanding of how to make these forecasts and what data should be available/fed in?



      Currently: Since the ConvLSTM2D Layer takes the following input (#Samples, Frame, Row, Col, Channel). I have reshaped as follows: (1, 100, 50, 50, 1) where I have a single video sample, which contains 100 frames, 50 rows and columns and a single channel. With x, y datasets as arr[:,:-1,:,:,:] and arr[:,1:,:,:,:] respectively.



      Model I have created (might be wrong):



      def createConvLSTMModel(dim0, dim1, dim2):

      #Create the model
      model = Sequential()

      ## Add layers to the model
      #Add the first convolutional LSTM unit (with input)
      model.add(ConvLSTM2D(filters=32,
      kernel_size=(3, 3),
      kernel_initializer='glorot_uniform',
      strides=(1,1),
      activation='relu',
      batch_input_shape=(None, dim1, dim2, 1),
      padding='same',
      #stateful=True,
      return_sequences=True))
      #Perform batch normalisation
      model.add(BatchNormalization())

      #Add the second convolutional LSTM unit
      model.add(ConvLSTM2D(filters=32,
      kernel_size=(3, 3),
      kernel_initializer='glorot_uniform',
      strides=(1,1),
      activation='relu',
      padding='same',
      #stateful=True,
      return_sequences=True))
      #Perform batch normalisation
      model.add(BatchNormalization())


      #Add the third convolutional LSTM unit
      model.add(ConvLSTM2D(filters=64,
      kernel_size=(3, 3),
      kernel_initializer='glorot_uniform',
      strides=(1,1),
      activation='relu',
      padding='same',
      #stateful=True,
      return_sequences=True))
      #Perform batch normalisation
      model.add(BatchNormalization())

      #Add the fourth convolutional LSTM unit
      model.add(ConvLSTM2D(filters=64,
      kernel_size=(3, 3),
      kernel_initializer='glorot_uniform',
      strides=(1,1),
      activation='relu',
      padding='same',
      #stateful=True,
      return_sequences=True))
      #Perform batch normalisation
      model.add(BatchNormalization())

      #Add a final 3D convolution Layer
      model.add(Conv3D(filters=1, kernel_size=(3, 3, 3),
      activation='sigmoid',
      padding='same', data_format='channels_last'))

      #Configure the model for training
      model.compile(loss='binary_crossentropy', optimizer='adadelta')

      #Return the model
      return(model)
      ```






      keras tensorflow lstm convnet reshape






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Mar 25 at 8:28









      Daniel JDaniel J

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